ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ycjB1 - ECOD Domain | ECOD

ECOD/Domains/e1ycjB1

e1ycjB1

UID: 001523301

PDB

Range: B:430-535,B:763-805
PDB: 1YCJ chain B(all domains)
UniProt: P22756 (all domains)
Gene: Grik1

Molecule: Ionotropic glutamate receptor 5

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 1YCJ RCSB PDB: 1YCJ PDBe: 1YCJ UniProt: P22756

Downloads

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Drug annotations from DrugDomain.