ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pf8B2 - ECOD Domain | ECOD

ECOD/Domains/e4pf8B2

e4pf8B2

UID: 001523517

PDB

Range: B:25-144,B:235-325
PDB: 4PF8 chain B(all domains)
UniProt: A3T0C3 (all domains)

Molecule: TRAP-T family transporter, DctP (Periplasmic binding) subunit

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

beta-D-Galactopyranuronic acidGTR
drugDrugBank DB03652
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4PF8 RCSB PDB: 4PF8 PDBe: 4PF8 UniProt: A3T0C3

Downloads

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