ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4r3jB3 - ECOD Domain | ECOD

ECOD/Domains/e4r3jB3

e4r3jB3

UID: 001523981

PDB

Range: B:614-678,B:808-953
PDB: 4R3J chain B(all domains)
UniProt: C8W8H7 (all domains)
Gene: Apar_1344

Molecule: Peptidoglycan glycosyltransferase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

(2R)-2-[(1R)-1-(acetylamino)-2-oxoethyl]-5-methyl-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acidCFU

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ion

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 4R3J RCSB PDB: 4R3J PDBe: 4R3J UniProt: C8W8H7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.