ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4x8rA2 - ECOD Domain | ECOD

ECOD/Domains/e4x8rA2

e4x8rA2

UID: 001524150

PDB

Range: A:22-144,A:235-325
PDB: 4X8R chain A(all domains)
UniProt: A3PLM5 (all domains)

Molecule: TRAP dicarboxylate transporter, DctP subunit

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

beta-D-glucuronic acidBDP
drugDrugBank DB03156

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4X8R RCSB PDB: 4X8R PDBe: 4X8R UniProt: A3PLM5

Downloads

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Drug annotations from DrugDomain.