ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q5mA1 - ECOD Domain | ECOD

ECOD/Domains/e4q5mA1

e4q5mA1

UID: 001545102

PDB

Range: A:1-99,A:1001-1099
PDB: 4Q5M chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

SaquinavirROC
drugDrugBank DB01232

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4Q5M RCSB PDB: 4Q5M PDBe: 4Q5M UniProt: P04585

Downloads

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