ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ymeA1 - ECOD Domain | ECOD

ECOD/Domains/e2ymeA1

e2ymeA1

UID: 000154542

PDB

Range: A:1-205
PDB: 2YME chain A(all domains)
UniProt: Q8WSF8 (all domains)
Gene: LOC100533247

Molecule: SOLUBLE ACETYLCHOLINE RECEPTOR

3D Structure

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Related Domains

Browse other domains in Neur_chan_LBD →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupNicotinic receptor ligand binding domain-like(11.12)

TT-groupNicotinic receptor ligand binding domain-like(11.12.1)

FFamilyNeur_chan_LBD(11.12.1.1)

Ligands

in contact, ≤ 4 Å

GranisetronCWB
drugDrugBank DB00889
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

PF02931Neur_chan_LBD

Neurotransmitter-gated ion-channel ligand binding domain

ClanCL0974NLGIC_lig-bind

External Links

ECOD PDB View: 2YME RCSB PDB: 2YME PDBe: 2YME UniProt: Q8WSF8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.