ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4od9C1 - ECOD Domain | ECOD

ECOD/Domains/e4od9C1

e4od9C1

UID: 001547631

PDB

Range: C:2-98
PDB: 4OD9 chain C(all domains)
UniProt: P07339 (all domains)
Gene: CTSD

Molecule: Cathepsin D light chain

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

N-(3,4-dimethoxybenzyl)-Nalpha-{N-[(3,4-dimethoxyphenyl)acetyl]carbamimidoyl}-D-phenylalaninamide2RZ

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from .

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4OD9 RCSB PDB: 4OD9 PDBe: 4OD9 UniProt: P07339

Downloads

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