ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dbeA1 - ECOD Domain | ECOD

ECOD/Domains/e4dbeA1

e4dbeA1

UID: 000154904

PDB

Range: A:2-214
PDB: 4DBE chain A(all domains)
UniProt: D0KT28 (all domains)
Gene: pyrF

Molecule: Orotidine 5'-phosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in OMPdecase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOMPdecase(2002.1.1.9)

Ligands

in contact, ≤ 4 Å

6-hydroxyuridine-5'-phosphateBMP
drugDrugBank DB02890

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00215OMPdecase

Orotidine 5'-phosphate decarboxylase / HUMPS family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4DBE RCSB PDB: 4DBE PDBe: 4DBE UniProt: D0KT28

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.