ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4gp4A1 - ECOD Domain | ECOD

ECOD/Domains/e4gp4A1

e4gp4A1

UID: 000154944

PDB

Range: A:9-562
PDB: 4GP4 chain A(all domains)
UniProt: Q5SJ79 (all domains)
Gene: cbaA

Molecule: Cytochrome c oxidase subunit 1

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Heme-asHAS
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 4GP4 RCSB PDB: 4GP4 PDBe: 4GP4 UniProt: Q5SJ79

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Peroxide ionPER

COPPER (II) IONCU

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.