ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4zdqA1 - ECOD Domain | ECOD

ECOD/Domains/e4zdqA1

e4zdqA1

UID: 001549534

PDB

Range: A:2-231
PDB: 4ZDQ chain A(all domains)
UniProt: Q2SWT6 (all domains)
Gene: ispD

Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Acetate)

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 4ZDQ RCSB PDB: 4ZDQ PDBe: 4ZDQ UniProt: Q2SWT6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.