ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1i96D1 - ECOD Domain | ECOD

ECOD/Domains/e1i96D1

e1i96D1

UID: 001549873

PDB

Range: D:2-209
PDB: 1I96 chain D(all domains)
UniProt: P80373 (all domains)
Gene: rpsD

Molecule: 30S RIBOSOMAL PROTEIN S4

3D Structure

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Related Domains

Browse other domains in Ribosomal_S4,S4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupAlpha-L RNA-binding motif(221.1.2)

FFamilyRibosomal_S4,S4(221.1.2.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Octadecatungstenyl diphosphateWO2
Zinc ionZN

Pfam Families

PF00163Ribosomal_S4

Ribosomal protein S4/S9 N-terminal domain

ClanCL0492S4

S4 domain

ClanCL0492S4

External Links

ECOD PDB View: 1I96 RCSB PDB: 1I96 PDBe: 1I96 UniProt: P80373

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.