ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2okcB1 - ECOD Domain | ECOD

ECOD/Domains/e2okcB1

e2okcB1

UID: 001550173

PDB

Range: B:148-432
PDB: 2OKC chain B(all domains)
UniProt: Q89Z59 (all domains)
Gene: hsdM

Molecule: Type I restriction enzyme StySJI M protein

3D Structure

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Related Domains

Browse other domains in N6_Mtase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyN6_Mtase(2003.1.5.22)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Chloride ionCL
within 5 Å only

+ 1 additive (Isopropyl alcohol)

Pfam Families

PF02384N6_Mtase

N-6 DNA Methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2OKC RCSB PDB: 2OKC PDBe: 2OKC UniProt: Q89Z59

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Isopropyl alcohol

DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.