ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5afmD1 - ECOD Domain | ECOD

ECOD/Domains/e5afmD1

e5afmD1

UID: 001552232

PDB

Range: D:0-204
PDB: 5AFM chain D(all domains)
UniProt: P36544 (all domains)
Gene: CHRNA7

Molecule: ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-7

3D Structure

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Related Domains

Browse other domains in Neur_chan_LBD →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupNicotinic receptor ligand binding domain-like(11.12)

TT-groupNicotinic receptor ligand binding domain-like(11.12.1)

FFamilyNeur_chan_LBD(11.12.1.1)

Ligands

in contact, ≤ 4 Å

LobelineL0B
drugDrugBank DB05137
N-AcetylglucosamineNAG
drugDrugBank DB00141
4,5-dibromo-N-(3-hydroxypropyl)-1H-pyrrole-2-carboxamide

Pfam Families

PF02931Neur_chan_LBD

Neurotransmitter-gated ion-channel ligand binding domain

ClanCL0974NLGIC_lig-bind

External Links

ECOD PDB View: 5AFM RCSB PDB: 5AFM PDBe: 5AFM UniProt: P36544

Downloads

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+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.