ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bxiI1 - ECOD Domain | ECOD

ECOD/Domains/e5bxiI1

e5bxiI1

UID: 001562962

PDB

Range: I:4-155
PDB: 5BXI chain I(all domains)
UniProt: S8FF85 (all domains)

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 5BXI RCSB PDB: 5BXI PDBe: 5BXI UniProt: S8FF85

Downloads

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