ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wycB2 - ECOD Domain | ECOD

ECOD/Domains/e4wycB2

e4wycB2

UID: 001565262

PDB

Range: B:7-339
PDB: 4WYC chain B(all domains)
UniProt: P9WQ81 (all domains)
Gene: bioA

Molecule: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

3D Structure

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Related Domains

Browse other domains in Aminotran_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyAminotran_3(7577.1.1.2)

Ligands

in contact, ≤ 4 Å

FormaldehydeFOR
drugDrugBank DB03843
Pyridoxal phosphatePLP
drugDrugBank DB00114
4-(1H-imidazol-1-yl)benzamide

Pfam Families

PF00202Aminotran_3

Aminotransferase class-III

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4WYC RCSB PDB: 4WYC PDBe: 4WYC UniProt: P9WQ81

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.