ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4y06B1 - ECOD Domain | ECOD

ECOD/Domains/e4y06B1

e4y06B1

UID: 001566772

PDB

Range: B:277-573
PDB: 4Y06 chain B(all domains)
UniProt: V5YM14 (all domains)
Gene: dapb2

Molecule: Dipeptidyl aminopeptidase BII

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S46 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupHelical bundle domain in S46 peptidase(6151)

HH-groupHelical bundle domain in S46 peptidase(6151.1)

TT-groupHelical bundle domain in S46 peptidase(6151.1.1)

FFamilyPeptidase_S46(6151.1.1.1)

Ligands

in contact, ≤ 4 Å

LeucineLEU
drugDrugBank DB00149
Zinc ionZN
metal

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer.

Pfam Families

PF10459Peptidase_S46

Peptidase S46

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 4Y06 RCSB PDB: 4Y06 PDBe: 4Y06 UniProt: V5YM14

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.