ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cm6B2 - ECOD Domain | ECOD

ECOD/Domains/e5cm6B2

e5cm6B2

UID: 001569229

PDB

Range: B:26-149,B:240-354
PDB: 5CM6 chain B(all domains)
UniProt: Q15TH9 (all domains)

Molecule: TRAP dicarboxylate transporter-DctP subunit

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

Pyruvic acidPYR
drugDrugBank DB00119
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 5CM6 RCSB PDB: 5CM6 PDBe: 5CM6 UniProt: Q15TH9

Downloads

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