ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1vs3A1 - ECOD Domain | ECOD

ECOD/Domains/e1vs3A1

e1vs3A1

UID: 000162845

PDB

Range: A:1-249
PDB: 1VS3 chain A(all domains)
UniProt: Q5SHU9 (all domains)
Gene: truA

Molecule: tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA pseudouridine(38-40) synthase) (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase I)

3D Structure

Loading viewer...

Related Domains

Browse other domains in PseudoU_synth_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_1(304.102.1.3)

Pfam Families

PF01416PseudoU_synth_1

tRNA pseudouridine synthase

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 1VS3 RCSB PDB: 1VS3 PDBe: 1VS3 UniProt: Q5SHU9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure