ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2j97A1 - ECOD Domain | ECOD

ECOD/Domains/e2j97A1

e2j97A1

UID: 000166338

PDB

Range: A:8-109
PDB: 2J97 chain A(all domains)
UniProt: P0C6X1 (all domains)
Gene: rep

Molecule: REPLICASE POLYPROTEIN 1AB

3D Structure

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Related Domains

Browse other domains in CoV_NSP9 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPhage tail proteins(1.1.13)

FFamilyCoV_NSP9(1.1.13.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF08710CoV_NSP9

Coronavirus replicase NSP9

ClanCL0504Phage_barrel

External Links

ECOD PDB View: 2J97 RCSB PDB: 2J97 PDBe: 2J97 UniProt: P0C6X1

Downloads

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Drug annotations from DrugDomain.