ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pnzA2 - ECOD Domain | ECOD

ECOD/Domains/e2pnzA2

e2pnzA2

UID: 000167293

PDB

Range: A:9-151
PDB: 2PNZ chain A(all domains)
UniProt: Q9V119 (all domains)
Gene: rrp41

Molecule: Probable exosome complex exonuclease 1

3D Structure

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Related Domains

Browse other domains in RNase_PH →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyRNase_PH(212.1.1.10)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-Monophosphate5GP
drugDrugBank DB01972
Uridine-5'-DiphosphateUDP
drugDrugBank DB03435

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF01138RNase_PH

3' exoribonuclease family, domain 1

ClanCL0329S5

External Links

ECOD PDB View: 2PNZ RCSB PDB: 2PNZ PDBe: 2PNZ UniProt: Q9V119

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.