ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xxbB1 - ECOD Domain | ECOD

ECOD/Domains/e4xxbB1

e4xxbB1

UID: 001678294

PDB

Range: B:293-334
PDB: 4XXB chain B(all domains)
UniProt: Q00987 (all domains)
Gene: MDM2

Molecule: E3 ubiquitin-protein ligase Mdm2

3D Structure

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Related Domains

Browse other domains in zf-RanBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyzf-RanBP(375.1.1.4)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
Zinc ionZN
metal

+ 1 additive (Imidazole)

Pfam Families

PF00641Zn_ribbon_RanBP

Zn-finger in Ran binding protein and others

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 4XXB RCSB PDB: 4XXB PDBe: 4XXB UniProt: Q00987

Downloads

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Imidazole

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.