ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yrfA1 - ECOD Domain | ECOD

ECOD/Domains/e4yrfA1

e4yrfA1

UID: 001680254

PDB

Range: A:48-381
PDB: 4YRF chain A(all domains)
UniProt: Q4DA54 (all domains)
Gene: Tc00.1047053507019.40

Molecule: Histidyl-tRNA synthetase, putative

3D Structure

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Related Domains

Browse other domains in tRNA-synt_His →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_His(314.1.1.9)

Ligands

in contact, ≤ 4 Å

HistidineHIS
drugDrugBank DB00117
5-bromopyridin-2(1H)-one4HS

+ 3 additives (Dimethyl sulfoxide, Sulfate ion, 1,2-ETHANEDIOL)

Dimethyl sulfoxide

Pfam Families

PF13393tRNA-synt_His

Histidyl-tRNA synthetase

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 4YRF RCSB PDB: 4YRF PDBe: 4YRF UniProt: Q4DA54

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.