ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4u87B1 - ECOD Domain | ECOD

ECOD/Domains/e4u87B1

e4u87B1

UID: 001680593

PDB

Range: B:3-133
PDB: 4U87 chain B(all domains)
UniProt: P13921 (all domains)
Gene: repB

Molecule: Replication protein RepB

3D Structure

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Related Domains

Browse other domains in Rep_OBD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyRep_OBD(304.55.1.3)

Ligands

in contact, ≤ 4 Å

Barium ionBA
metal
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01719Rep_OBD

Plasmid replication protein, origin binding domain

ClanCL0169Rep

External Links

ECOD PDB View: 4U87 RCSB PDB: 4U87 PDBe: 4U87 UniProt: P13921

Downloads

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