ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5cd4A1 - ECOD Domain | ECOD

ECOD/Domains/e5cd4A1

e5cd4A1

UID: 001681331

PDB

Range: A:67-199
PDB: 5CD4 chain A(all domains)
UniProt: Q46897 (all domains)
Gene: casE

Molecule: CRISPR system Cascade subunit CasE (EC 3.1.-.-) (CasE endoRNase) (crRNA endonuclease)

3D Structure

Loading viewer...

Related Domains

Browse other domains in CRISPR_assoc →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCRISPR_assoc(304.51.1.3)

Pfam Families

PF08798CRISPR_assoc

CRISPR associated protein

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 5CD4 RCSB PDB: 5CD4 PDBe: 5CD4 UniProt: Q46897

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure