ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5cm6A2 - ECOD Domain | ECOD

ECOD/Domains/e5cm6A2

e5cm6A2

UID: 001683722

PDB

Range: A:26-149,A:240-356
PDB: 5CM6 chain A(all domains)
UniProt: Q15TH9 (all domains)

Molecule: TRAP dicarboxylate transporter-DctP subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

Pyruvic acidPYR
drugDrugBank DB00119
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 5CM6 RCSB PDB: 5CM6 PDBe: 5CM6 UniProt: Q15TH9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure