ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bxpB1 - ECOD Domain | ECOD

ECOD/Domains/e5bxpB1

e5bxpB1

UID: 001684415

PDB

Range: B:179-518
PDB: 5BXP chain B(all domains)
UniProt: B3TLD6 (all domains)
Gene: lnbB

Molecule: Lacto-N-biosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_20 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_20(2002.1.1.33)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00728Glyco_hydro_20

Glycosyl hydrolase family 20, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5BXP RCSB PDB: 5BXP PDBe: 5BXP UniProt: B3TLD6

Downloads

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