ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5deiA2 - ECOD Domain | ECOD

ECOD/Domains/e5deiA2

e5deiA2

UID: 001685218

PDB

Range: A:3-182
PDB: 5DEI chain A(all domains)
UniProt: P20906 (all domains)
Gene: mdlC

Molecule: Benzoylformate decarboxylase

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_N(7574.1.1.7)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Thiamine diphosphateTPP
within 5 Å only

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Pfam Families

PF02776TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 5DEI RCSB PDB: 5DEI PDBe: 5DEI UniProt: P20906

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.