ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4y4vA1 - ECOD Domain | ECOD

ECOD/Domains/e4y4vA1

e4y4vA1

UID: 001687004

PDB

Range: A:58-203
PDB: 4Y4V chain A(all domains)
UniProt: O25255 (all domains)
Gene: HP_0518

Molecule: Conserved hypothetical secreted protein

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

D-AlanineDAL
drugDrugBank DB01786

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 4Y4V RCSB PDB: 4Y4V PDBe: 4Y4V UniProt: O25255

Downloads

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Drug annotations from DrugDomain.