ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5amvA1 - ECOD Domain | ECOD

ECOD/Domains/e5amvA1

e5amvA1

UID: 001688780

PDB

Range: A:1-399
PDB: 5AMV chain A(all domains)
UniProt: P39116 (all domains)
Gene: pel

Molecule: PECTATE LYASE

3D Structure

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Related Domains

Browse other domains in Pectate_lyase_4 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase_4(207.2.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
Glycerin

Pfam Families

PF00544Pectate_lyase_4

Pectate lyase

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5AMV RCSB PDB: 5AMV PDBe: 5AMV UniProt: P39116

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.