ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2nyaF4 - ECOD Domain | ECOD

ECOD/Domains/e2nyaF4

e2nyaF4

UID: 001693030

RepresentativePDB

Range: F:1-33,F:60-153,F:383-666
PDB: 2NYA chain F(all domains)
UniProt: P33937 (all domains)
Gene: napA

Molecule: Periplasmic nitrate reductase

3D Structure

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Related Domains

Browse other domains in Molybdopterin,Molybdop_Fe4S4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2)

TT-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2.1)

FFamilyMolybdopterin,Molybdop_Fe4S4(2003.2.1.2)

Ligands

in contact, ≤ 4 Å

MOLYBDENUM(VI) ION6MO
metal
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD
Iron/sulfur clusterSF4

Pfam Families

PF00384Molybdopterin

Molybdopterin oxidoreductase

PF04879Molybdop_Fe4S4

Molybdopterin oxidoreductase Fe4S4 domain

ClanCL03444Fe-4S

External Links

ECOD PDB View: 2NYA RCSB PDB: 2NYA PDBe: 2NYA UniProt: P33937

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.