ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pfdB1 - ECOD Domain | ECOD

ECOD/Domains/e4pfdB1

e4pfdB1

UID: 001694956

PDB

Range: B:195-267,B:299-461
PDB: 4PFD chain B(all domains)
UniProt: P9WJF1 (all domains)
Gene: dprE1

Molecule: Probable decaprenylphosphoryl-beta-D-ribose oxidase

3D Structure

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Related Domains

Browse other domains in ALO →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyALO(304.6.1.2)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
[4-(2-methoxyethyl)piperazin-1-yl][6-methyl-7-nitro-5-(trifluoromethyl)-1,3-benzothiazol-2-yl]methanone2R2

+ 1 additive (Imidazole)

Pfam Families

D-arabinono-1,4-lactone oxidase

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 4PFD RCSB PDB: 4PFD PDBe: 4PFD UniProt: P9WJF1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

ImidazoleIMD

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.