ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ihmB2 - ECOD Domain | ECOD

ECOD/Domains/e1ihmB2

e1ihmB2

UID: 001696106

PDB

Range: B:2229-2277,B:2407-2520
PDB: 1IHM chain B(all domains)
UniProt: Q83884 (all domains)
Gene: ORF2

Molecule: Capsid protein VP1 (CP) (Coat protein) (p59) [Cleaved into: Soluble capsid protein (Protein 30k) (p30)]

3D Structure

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Related Domains

Browse other domains in Calici_coat, Calici_coat_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupCapsid protein protrusion (P) domain(1.2)

TT-groupCapsid protein protrusion (P) domain(1.2.1)

FFamilyCalici_coat, Calici_coat_C(1.2.1.4)

Pfam Families

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1IHM RCSB PDB: 1IHM PDBe: 1IHM UniProt: Q83884

Downloads

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