ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5afxA1 - ECOD Domain | ECOD

ECOD/Domains/e5afxA1

e5afxA1

UID: 001698136

PDB

Range: A:1-367
PDB: 5AFX chain A(all domains)
UniProt: Q86C09 (all domains)

Molecule: FARNESYL PYROPHOSPHATE SYNTHASE

3D Structure

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Related Domains

Browse other domains in polyprenyl_synt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilypolyprenyl_synt(141.1.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
[1-hydroxy-2-(1-nonyl-1H-3lambda~5~-imidazol-3-yl)ethane-1,1-diyl]bis(phosphonic acid)PVZ

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00348polyprenyl_synt

Polyprenyl synthetase

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 5AFX RCSB PDB: 5AFX PDBe: 5AFX UniProt: Q86C09

Downloads

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