ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rvyl1 - ECOD Domain | ECOD

ECOD/Domains/e4rvyl1

e4rvyl1

UID: 001699799

PDB

Range: l:1-37
PDB: 4RVY chain l(all domains)
UniProt: Q8DIN8 (all domains)
Gene: psbL

Molecule: Photosystem II reaction center protein L

3D Structure

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Related Domains

Browse other domains in PsbL →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction center protein L, PsbL(5030)

HH-groupPhotosystem II reaction center protein L, PsbL(5030.1)

TT-groupPhotosystem II reaction center protein L, PsbL(5030.1.1)

FFamilyPsbL(5030.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043
Chlorophyll aCLA
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

Pfam Families

PsbL protein

External Links

ECOD PDB View: 4RVY RCSB PDB: 4RVY PDBe: 4RVY UniProt: Q8DIN8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer. Drug annotations from DrugDomain.