ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5dquF1 - ECOD Domain | ECOD

ECOD/Domains/e5dquF1

e5dquF1

UID: 001712633

PDB

Range: F:2-93
PDB: 5DQU chain F(all domains)
UniProt: P45956 (all domains)
Gene: ygbF

Molecule: CRISPR-associated endoribonuclease Cas2 (EC 3.1.-.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cas_Cas2CT1978 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR associated protein Cas2-like(304.56)

TT-groupCRISPR associated protein Cas2-like(304.56.1)

FFamilyCas_Cas2CT1978(304.56.1.1)

Pfam Families

PF09707Cas_Cas2CT1978

CRISPR-associated protein (Cas_Cas2CT1978)

ClanCL0728Cas2

External Links

ECOD PDB View: 5DQU RCSB PDB: 5DQU PDBe: 5DQU UniProt: P45956

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure