ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5duoC1 - ECOD Domain | ECOD

ECOD/Domains/e5duoC1

e5duoC1

UID: 001712642

PDB

Range: C:2-150
PDB: 5DUO chain C(all domains)
UniProt: Q9RFC8 (all domains)
Gene: tspO

Molecule: Tryptophan-rich sensory protein

3D Structure

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Related Domains

Browse other domains in TspO_MBR →

Classification

AArchitecturealpha bundles(a.7)

XX-groupMitochondrial translocator protein (TSPO)(3861)

HH-groupMitochondrial translocator protein (TSPO)(3861.1)

TT-groupMitochondrial translocator protein (TSPO)(3861.1.1)

FFamilyTspO_MBR(3861.1.1.1)

Ligands

in contact, ≤ 4 Å

ProtoporphyrinPP9
drugDrugBank DB02285
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

+ 1 additive (Formic acid)

Formic acid

Pfam Families

PF03073TspO_MBR

TspO/MBR family

ClanCL0976TSPO

External Links

ECOD PDB View: 5DUO RCSB PDB: 5DUO PDBe: 5DUO UniProt: Q9RFC8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.