ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5a4mM3 - ECOD Domain | ECOD

ECOD/Domains/e5a4mM3

e5a4mM3

UID: 001714712

PDB

Range: M:96-335,M:405-487
PDB: 5A4M chain M(all domains)
UniProt: P0ACD8 (all domains)
Gene: hyaB

Molecule: HYDROGENASE-1 LARGE CHAIN

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025)

HH-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1)

TT-groupalpha-helical domain in nickel-iron hydrogenase, large subunit(4025.1.1)

FFamilyNiFeSe_Hases(4025.1.1.2)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S
Ni-fe oxidized active centerNFV
within 5 Å only
FE4-S3 CLUSTERSF3

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

External Links

ECOD PDB View: 5A4M RCSB PDB: 5A4M PDBe: 5A4M UniProt: P0ACD8

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.