ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4rpuB2 - ECOD Domain | ECOD

ECOD/Domains/e4rpuB2

e4rpuB2

UID: 001716784

PDB

Range: B:299-553
PDB: 4RPU chain B(all domains)
UniProt: Q5JRX3 (all domains)
Gene: PITRM1

Molecule: Presequence protease, mitochondrial (hPreP) (EC 3.4.24.-) (Pitrilysin metalloproteinase 1) (Metalloprotease 1) (hMP1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M16_C,M16C_assoc →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPeptidase_M16_C,M16C_assoc(309.1.1.5)

Pfam Families

PF05193Peptidase_M16_C

Peptidase M16 inactive domain

ClanCL0094Peptidase_ME

PF08367M16C_assoc

Peptidase M16C associated

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 4RPU RCSB PDB: 4RPU PDBe: 4RPU UniProt: Q5JRX3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure