ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c1bA3 - ECOD Domain | ECOD

ECOD/Domains/e5c1bA3

e5c1bA3

UID: 001723746

PDB

Range: A:466-648
PDB: 5C1B chain A(all domains)
UniProt: P55072 (all domains)
Gene: VCP

Molecule: Transitional endoplasmic reticulum ATPase

3D Structure

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Related Domains

Browse other domains in AAA, RuvB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA, RuvB_N(2004.1.1.415)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930
Chloride ionCL
Magnesium ionMG

Pfam Families

ATPase family associated with various cellular activities (AAA)

ClanCL0023P-loop_NTPase

Holliday junction DNA helicase RuvB P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5C1B RCSB PDB: 5C1B PDBe: 5C1B UniProt: P55072

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.