ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5e5oA2 - ECOD Domain | ECOD

ECOD/Domains/e5e5oA2

e5e5oA2

UID: 001723986

PDB

Range: A:167-300
PDB: 5E5O chain A(all domains)
UniProt: F7WD42 (all domains)
Gene: SMAC_12671

Molecule: I-SmaMI LAGLIDADG endonuclease

3D Structure

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Related Domains

Browse other domains in LAGLIDADG_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-groupHoming endonucleases(242.1)

TT-groupHoming endonucleases(242.1.1)

FFamilyLAGLIDADG_1(242.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00961LAGLIDADG_1

LAGLIDADG endonuclease

ClanCL0324Homing_endonuc

External Links

ECOD PDB View: 5E5O RCSB PDB: 5E5O PDBe: 5E5O UniProt: F7WD42

Downloads

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