ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f39C1 - ECOD Domain | ECOD

ECOD/Domains/e5f39C1

e5f39C1

UID: 001726298

PDB

Range: C:7-354
PDB: 5F39 chain C(all domains)
UniProt: O75164 (all domains)
Gene: KDM4A

Molecule: Lysine-specific demethylase 4A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

8-(1,3-thiazol-4-yl)-3~{H}-pyrido[3,4-d]pyrimidin-4-one5UB
Zinc ionZN
metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5F39 RCSB PDB: 5F39 PDBe: 5F39 UniProt: O75164

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.