ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5fojB2 - ECOD Domain | ECOD

ECOD/Domains/e5fojB2

e5fojB2

UID: 001726467

PDB

Range: B:343-504
PDB: 5FOJ chain B(all domains)
UniProt: P18474 (all domains)

Molecule: RNA2 polyprotein (P2) [Cleaved into: Protein 2A (P2A); Movement protein (2B-MP); Coat protein (2C-CP)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Nepo_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyNepo_coat_C(10.2.1.37)

Pfam Families

PF03688Nepo_coat_C

Nepovirus coat protein, C-terminal domain

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5FOJ RCSB PDB: 5FOJ PDBe: 5FOJ UniProt: P18474

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure