ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5eq3B2 - ECOD Domain | ECOD

ECOD/Domains/e5eq3B2

e5eq3B2

UID: 001731832

PDB

Range: B:371-445
PDB: 5EQ3 chain B(all domains)
UniProt: A3CM52 (all domains)
Gene: srpA

Molecule: Platelet-binding glycoprotein

3D Structure

Loading viewer...

Related Domains

Browse other domains in aRib →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in platelet binding protein GspB(6107)

HH-groupa+b domain in platelet binding protein GspB(6107.1)

TT-groupa+b domain in platelet binding protein GspB(6107.1.1)

FFamilyaRib(6107.1.1.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Atypical Rib domain

ClanCL0159E-set

External Links

ECOD PDB View: 5EQ3 RCSB PDB: 5EQ3 PDBe: 5EQ3 UniProt: A3CM52

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure