ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xmxA4 - ECOD Domain | ECOD

ECOD/Domains/e4xmxA4

e4xmxA4

UID: 001736397

PDB

Range: A:551-870
PDB: 4XMX chain A(all domains)
UniProt: P04825 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in DUF3458_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyDUF3458_C(109.4.1.241)

Ligands

in contact, ≤ 4 Å

UbenimexBES
drugDrugBank DB03424within 5 Å only
Sodium ionNA
metal

+ 2 additives (Glycerol, Malonate ion)

GlycerolGOL

Pfam Families

PF17432DUF3458_C

Domain of unknown function (DUF3458_C) ARM repeats

ClanCL0020TPR

External Links

ECOD PDB View: 4XMX RCSB PDB: 4XMX PDBe: 4XMX UniProt: P04825

Downloads

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Malonate ionMLI

Shown in the structure viewer. Drug annotations from DrugDomain.