ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ikmA2 - ECOD Domain | ECOD

ECOD/Domains/e4ikmA2

e4ikmA2

UID: 001758402

PDB

Range: A:113-262
PDB: 4IKM chain A(all domains)
UniProt: Q9Y2G2 (all domains)
Gene: CARD8

Molecule: Maltose-binding periplasmic protein, Caspase recruitment domain-containing protein 8

3D Structure

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Related Domains

Browse other domains in SBP_bac_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_1(7523.1.1.8)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01547SBP_bac_1

Bacterial extracellular solute-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 4IKM RCSB PDB: 4IKM PDBe: 4IKM UniProt: Q9Y2G2

Downloads

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