ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5dnyB1 - ECOD Domain | ECOD

ECOD/Domains/e5dnyB1

e5dnyB1

UID: 001779584

RepresentativePDB

Range: B:1-157,B:872-1005
PDB: 5DNY chain B(all domains)
UniProt: Q58718 (all domains)
Gene: rad50

Molecule: DNA double-strand break repair Rad50 ATPase

3D Structure

Loading viewer...

Related Domains

Browse other domains in AAA_23, AAA_29, SbcC_Walker_B →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_23, AAA_29, SbcC_Walker_B(2004.1.1.514)

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

P-loop containing region of AAA domain

ClanCL0023P-loop_NTPase

PF13558SbcC_Walker_B

SbcC/RAD50-like, Walker B motif

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5DNY RCSB PDB: 5DNY PDBe: 5DNY UniProt: Q58718

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure