ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4jB2 - ECOD Domain | ECOD

ECOD/Domains/e5d4jB2

e5d4jB2

UID: 001788123

PDB

Range: B:165-339
PDB: 5D4J chain B(all domains)
UniProt: P38501 (all domains)
Gene: nirK

Molecule: Copper-containing nitrite reductase

3D Structure

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Related Domains

Browse other domains in Cu-oxidase →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupCupredoxin-like(3156)

HH-groupCupredoxin-related(3156.1)

TT-groupCupredoxin-related(3156.1.1)

FFamilyCu-oxidase(3156.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
COPPER (II) IONCU
metal

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY

Pfam Families

PF00394Cu-oxidase

Multicopper oxidase

ClanCL0026CU_oxidase

External Links

ECOD PDB View: 5D4J RCSB PDB: 5D4J PDBe: 5D4J UniProt: P38501

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.