ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dwkC1 - ECOD Domain | ECOD

ECOD/Domains/e5dwkC1

e5dwkC1

UID: 001790832

PDB

Range: C:15-120
PDB: 5DWK chain C(all domains)
UniProt: P0ABN1 (all domains)
Gene: dgkA

Molecule: Diacylglycerol kinase

3D Structure

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Related Domains

Browse other domains in DAGK_prokar →

Classification

AArchitecturealpha bundles(a.7)

XX-groupDiacylglycerol kinase (DAGK)(3086)

HH-groupDiacylglycerol kinase (DAGK)(3086.1)

TT-groupDiacylglycerol kinase (DAGK)(3086.1.1)

FFamilyDAGK_prokar(3086.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78N
Zinc ionZN

Pfam Families

PF01219DAGK_prokar

Prokaryotic diacylglycerol kinase

External Links

ECOD PDB View: 5DWK RCSB PDB: 5DWK PDBe: 5DWK UniProt: P0ABN1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Acetate, Citric acid)

AcetateACT
DrugBank DB14511
Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.