ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3jcrV2 - ECOD Domain | ECOD

ECOD/Domains/e3jcrV2

e3jcrV2

UID: 001792739

PDB

Range: V:105-190
PDB: 3JCR chain V(all domains)
UniProt: Q53GS9 (all domains)
Gene: USP39

Molecule: Ubiquitin carboxyl-terminal hydrolase 39 (EC 3.4.19.12) (SAD1 homolog) (U4/U6.U5 tri-snRNP-associated 65 kDa protein)

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-UBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

ECOD PDB View: 3JCR RCSB PDB: 3JCR PDBe: 3JCR UniProt: Q53GS9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure