ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5a5fA1 - ECOD Domain | ECOD

ECOD/Domains/e5a5fA1

e5a5fA1

UID: 001821240

PDB

Range: A:94-293
PDB: 5A5F chain A(all domains)
UniProt: P14900 (all domains)
Gene: murD

Molecule: UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-AlanineUMA
drugDrugBank DB01673

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5A5F RCSB PDB: 5A5F PDBe: 5A5F UniProt: P14900

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Malonate Ion)

Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.